Spades-day2-pc.rar May 2026

Match this to your CPU's physical cores to speed up the process (e.g., -t 4 ). 3. Focus on Scaffolds vs. Contigs

Running the spades.py command on the cleaned "Day 2" datasets. SPADES-Day2-pc.rar

The most useful feature you should leverage for this topic is the during assembly. 1. Enable the Careful Assembly Mode Match this to your CPU's physical cores to

Inside your output directory (likely specified in your workshop instructions), you will find two main results: contigs.fasta and scaffolds.fasta . SPADES-Day2-pc.rar

It reduces the number of mismatches and short indels (insertions/deletions) by running a post-processing tool called MismatchCorrector.

Using tools like Trimmomatic to clean your raw data before assembly.